Combines spectra (by taking the average, for example) according to an index
or a vector of identities.
aggspec(rspecdata, by = NULL, FUN = mean, trim = TRUE)
(required) a data frame, possibly of class
contains a column containing a wavelength range, named 'wl', and spectra
data in remaining columns.
(required) either a single value specifying the range of spectra
within the data frame to be combined (for example,
by = 3 indicates the
function will be applied to groups of 3 consecutive columns in the spectra
data frame); a vector containing identifications for the columns in the
spectra data frame (in which case the function will be applied to each
group of spectra sharing the same identification); or a list of vectors,
by = list(sex, species).
the function to be applied to the groups of spectra. (defaults to
TRUE (default), the function will try to identify
and remove numbers at the end of the names of the columns in the new rspec
A data frame of class
rspec containing the spectra after applying
the aggregating function.
Montgomerie R (2006) Analyzing colors. In: Hill G, McGraw K (eds)
Bird coloration. Harvard University Press, Cambridge, pp 90-147.
Chad Eliason email@example.com
# Average every two spectra
teal.sset1 <- aggspec(teal
, by = 2)
# Create factor and average spectra by levels 'a' and 'b'
ind <- rep(c("a"
, times = 6)
teal.sset2 <- aggspec(teal
, by = ind)